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Lurking lung cancer alleles

06/01/2006
Lurking lung cancer alleles

Researchers identify common sequence differences in human DNA that confer genetic susceptibility to lung cancer

LONDON, U.K., Thurs., June 1, 2006 – In the largest genome-wide scan for lung cancer-susceptibility genes to date, scientists from The Institute of Cancer Research have identified 64 gene variants that may predispose some individuals to lung cancer. These genetic variants are known as "low-penetrance alleles" because they only occasionally stimulate tumor development. The study, which appears today in the scientific journal Genome Research, will eventually help researchers to pinpoint the various genetic and environmental causes of lung cancer.

As the most common malignancy in the world, lung cancer is predominantly caused by a single environmental factor: tobacco smoke. Studies have shown that long-term cigarette smokers have a 10-fold increased risk of acquiring lung cancer when compared to non-smokers. But in recent years, scientists have accumulated evidence that hereditary factors also contribute to lung cancer susceptibility. For example, a higher prevalence of the disease has been observed in patients with Bloom's and Werner's syndromes, who have inherited mutations in specific genes that are involved in DNA replication, recombination, and repair.

"Our research suggests that it is highly unlikely that only one or two genes are primarily responsible for the genetic basis of lung cancer," explains Dr. Richard Houlston from The Institute of Cancer Research and Cancer Research UK, who co-led the study with Dr. Tim Eisen from The Institute of Cancer Research and The Royal Marsden NHS Foundation Trust. "The exact nature of lung cancer susceptibility is probably much more complex. We hypothesized that most of the inherited genetic risk is posed by sequence changes in the genome that augment the effects of exposure to cigarette smoke."

As part of the U.K.-based Genetic Lung Cancer Predisposition Study (GELCAPS), the researchers tested DNA samples from 2707 healthy individuals and 1529 lung cancer patients. In each of these samples, they evaluated a total 1476 DNA variants known as single nucleotide polymorphisms (SNPs) in 871 genes with a presumptive role in cancer biology.

In total, 64 of the SNPs were found to be associated with lung cancer development. Several of these SNPs alter the structure or function of an expressed protein, so it is possible that they are directly responsible for the observed association. Additional research will be required to understand the exact role that each of these genetic variants plays in increasing one's risk of lung cancer.

"Whilst our research indicates that certain individuals could be at higher risk of developing the disease, it has been proven that the majority of cases of lung cancer are caused by tobacco smoke. It's important to remember that tobacco smoke is far and away the biggest risk factor for lung cancer," warns Houlston.

Drs. Richard Houlston (genetic queries; richard.houlston@icr.ac.uk) and Tim Eisen (clinical queries; tim.eisen@icr.ac.uk) have agreed to be contacted for additional information.

Interested reporters may obtain pre-print copies of the manuscript from Maria Smit, Assistant Editor, Genome Research (smit@cshl.edu). The manuscript will be published in the June issue of Genome Research and will appear online (DOI: 10.1101/gr.5120106) on June 1.

Genome Research (www.genome.org) is an international, monthly, peer-reviewed journal published by Cold Spring Harbor Laboratory Press. Launched in 1995, it is one of the five most highly cited primary research journals in genetics and genomics.

Cold Spring Harbor Laboratory Press is an internationally renowned publisher of books, journals, and electronic media, located on Long Island, New York. It is a division of Cold Spring Harbor Laboratory, an innovator in life science research and the education of scientists, students, and the public. For more information, visit www.cshlpress.com.

Genome Research issues press releases to highlight significant research studies that are published in the journal.

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